We tested the performance of LPP with different percent information kept in the PCA step.
We tried options.PCARatio (= 1, 0.99, 0.98, 0.97).
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options = [];
options.PCARatio = 1 (0.99/0.98/0.97);

[Vec,Val]=LPP(fea_Train,W,options);
%=================================

The affinity matrix is constructed as follow:
%====================================
options = [];
options.Metric = 'Cosine';
options.NeighborMode = 'Supervised';
options.WeightMode = 'Cosine';
options.bSelfConnected = 1;
options.gnd = gnd_Train;

W = constructW(fea_Train,options);
%=================================

The data is used without further pre-processing.
The only difference of the experimental results shown on the right from previous one is that we pre-process the data by normalizing each face vector to the unit.